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| 1. | Young Justice Main Title [0:26] |
| 2. | Dynamic Duo Ice Freeze [1:26] |
| 3. | Star City [1:06] |
| 4. | Central City/Washington, D.C. [1:14] |
| 5. | Covert Ops [2:07] |
| 6. | Arrival of the League [2:15] |
| 7. | Red Tornado Arrives [1:01] |
| 8. | Martian Bio-Ship [1:55] |
| 9. | Aqualad Comes Home [0:58] |
| 10. | Mera Attacks [2:37] |
| 11. | M'gann Finds Kid Flash & Artemis [2:01] |
| 12. | Psimon Says Forget [1:14] |
| 13. | Skateboarding Kid [0:38] |
| 14. | Giant Water Eel Battle [1:05] |
| 15. | Team Re-Elects Aqualad [1:49] |
| 16. | Welcome to the Team [0:41] |
| 17. | Morrow Lab Source [1:38] |
| 18. | Planetary Destruction [1:42] |
| 19. | Red Tornado Saves the Earth [1:38] |
| 20. | Revenge Mode [1:36] |
| 21. | Subliminally Sad [0:46] |
| 22. | Artemis/Zatanna Rooftop Chase [2:35] |
| 23. | Watchtower Election [1:05] |
| 24. | Cheshire Is Back [2:16] |
| 25. | Vandal & Klarion Retreat [3:05] |
| 26. | Missing Sixteen Hours [1:28] |
| 27. | Meet Lobo [3:44] |
| 28. | Manta-Flyer [0:51] |
| 29. | Nathaniel Changes [1:07] |
| 30. | Artemis Deep Cover [1:26] |
| 31. | Roy's Desperation [2:37] |
| 32. | Undercover Artemis [1:07] |
| 33. | Mount Justice Destroyed [2:40] |
| 34. | The Scarab Connection [1:41] |
| 35. | Aqualad Brain Purée [1:57] |
| 36. | Mental Maneuvers [3:22] |
| 37. | Tick Tock Tick Tock [1:09] |
| 38. | White Limo [1:48] |
| 39. | Arsenal Still Running [0:44] |
| 40. | Return to Bialya [2:40] |
| 41. | Black Beetle Gets Away [1:27] |
| 42. | Wally's Sacrifice [3:13] |
| 43. | Business as Usual [1:16] |
| 44. | Young Justice End Credits [0:33] |
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| • | Add music info heard in the movie but not listed on the soundtrack CD. |
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